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Crystal structure of a putative protein-disulfide isomerase from Pseudomonas syringae to 2.5A resolution.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.1M Hepes pH 7.5, 2M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4.84 74.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.968 α = 90 b = 151.968 β = 90 c = 115.894 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM Q215r mirrors 2009-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97974 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 100 0.142 9 6 27739 27721 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.746 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 49.75 2 2 26297 1393 99.87 0.2078 0.20728 0.20568 0.23692 0.1968 RANDOM 40.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.289 r_dihedral_angle_4_deg 19.194 r_dihedral_angle_3_deg 17.312 r_dihedral_angle_1_deg 5.956 r_scangle_it 3.096 r_scbond_it 1.853 r_angle_refined_deg 1.352 r_mcangle_it 1.063 r_mcbond_it 0.533 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.289 r_dihedral_angle_4_deg 19.194 r_dihedral_angle_3_deg 17.312 r_dihedral_angle_1_deg 5.956 r_scangle_it 3.096 r_scbond_it 1.853 r_angle_refined_deg 1.352 r_mcangle_it 1.063 r_mcbond_it 0.533 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2762 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 17
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELX model building MLPHARE phasing DM model building ARP/wARP model building Coot model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing DM phasing