X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH UNDER OIL296.4precipitant: 1.6 M Ammonium Sulfate, 0.1 m Citric Acid, ph 4, 0.1 m Cis,Cis-Muconate. protein: 20 mM Tris HCL, 0.5 M NACL, ph 7.9, 250 mM Imdizale, 10% Glycerol protein and preicipitant mixed in a ratio of 3:1 , MICROBATCH UNDER OIL, temperature 296.4K
Crystal Properties
Matthews coefficientSolvent content
2.448.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 110.689α = 90
b = 115.41β = 90
c = 76.068γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDBending magnet2005-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.00000APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85099.90.07231.0987.82474173.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.998.60.4623.97.52405

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2F7B2.845.9824719122199.770.2090.2050.279RANDOM53.208
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.351.65-1.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.647
r_dihedral_angle_3_deg13.426
r_dihedral_angle_4_deg13.119
r_dihedral_angle_1_deg5.723
r_scangle_it2.324
r_scbond_it1.599
r_angle_refined_deg1.023
r_angle_other_deg0.884
r_mcangle_it0.583
r_mcbond_it0.433
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.647
r_dihedral_angle_3_deg13.426
r_dihedral_angle_4_deg13.119
r_dihedral_angle_1_deg5.723
r_scangle_it2.324
r_scbond_it1.599
r_angle_refined_deg1.023
r_angle_other_deg0.884
r_mcangle_it0.583
r_mcbond_it0.433
r_symmetry_vdw_other0.198
r_symmetry_hbond_refined0.192
r_nbd_refined0.19
r_nbd_other0.171
r_nbtor_refined0.167
r_symmetry_vdw_refined0.157
r_xyhbond_nbd_refined0.129
r_nbtor_other0.081
r_mcbond_other0.061
r_chiral_restr0.055
r_bond_refined_d0.007
r_bond_other_d0.004
r_gen_planes_refined0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6759
Nucleic Acid Atoms
Solvent Atoms246
Heterogen Atoms85

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data scaling