3GLA

Crystal Structure of the hspA from Xanthomonas axonopodis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.42930.1 M Tris HCl, 1.2 M (NH4)2HPO4, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.8968.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 128.674α = 90
b = 128.674β = 90
c = 55.251γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2006-01-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.43LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6426.9731000.0515.541715
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.641.710.4762.25.5

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1GME1.6426.97417101000.1840.18425.833
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.520.260.52-0.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.042
r_dihedral_angle_4_deg20.45
r_dihedral_angle_3_deg14.327
r_scangle_it8.279
r_dihedral_angle_1_deg6.314
r_scbond_it5.036
r_mcangle_it3.334
r_angle_refined_deg3.221
r_mcbond_it1.962
r_chiral_restr0.197
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.042
r_dihedral_angle_4_deg20.45
r_dihedral_angle_3_deg14.327
r_scangle_it8.279
r_dihedral_angle_1_deg6.314
r_scbond_it5.036
r_mcangle_it3.334
r_angle_refined_deg3.221
r_mcbond_it1.962
r_chiral_restr0.197
r_bond_refined_d0.037
r_gen_planes_refined0.018
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1576
Nucleic Acid Atoms
Solvent Atoms300
Heterogen Atoms10

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
MOSFLMdata reduction