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CRYSTAL STRUCTURE OF a DUF574 family protein (SAV_2177) FROM STREPTOMYCES AVERMITILIS MA-4680 AT 1.45 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.0 M Na citrate, 0.1 M Sodium cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.716 α = 90 b = 49.669 β = 94.72 c = 45.132 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97927 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 27.186 94.8 0.036 13.4 4.063 50240 -3 15.987
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 85.9 0.333 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 27.186 50239 2551 98.99 0.157 0.156 0.176 0.1989 RANDOM 18.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.42 -0.8 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.735 r_dihedral_angle_4_deg 14.108 r_dihedral_angle_3_deg 11.96 r_dihedral_angle_1_deg 5.86 r_scangle_it 2.498 r_mcangle_it 1.815 r_scbond_it 1.719 r_angle_refined_deg 1.511 r_mcbond_it 1.249 r_angle_other_deg 1.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.735 r_dihedral_angle_4_deg 14.108 r_dihedral_angle_3_deg 11.96 r_dihedral_angle_1_deg 5.86 r_scangle_it 2.498 r_mcangle_it 1.815 r_scbond_it 1.719 r_angle_refined_deg 1.511 r_mcbond_it 1.249 r_angle_other_deg 1.003 r_mcbond_other 0.307 r_symmetry_vdw_other 0.286 r_nbd_refined 0.219 r_nbd_other 0.203 r_symmetry_hbond_refined 0.198 r_nbtor_refined 0.174 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.169 r_xyhbond_nbd_other 0.102 r_chiral_restr 0.099 r_nbtor_other 0.081 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2023 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing