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CRYSTAL STRUCTURE OF putative D-3-phosphoglycerate dehydrogenase oxidoreductase from Ralstonia solanacearum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 100MM BIS-TRIS, 25% PEG3350, PH 5.5, 200MM AMMONIUM SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.58 52.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.034 α = 90 b = 97.625 β = 114.96 c = 97.808 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.2 0.098 5.9 4.9 124032 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 73.6 0.83 1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 20 115411 3603 96.05 0.201 0.19913 0.1991 0.26138 0.2574 RANDOM 41.661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.55 -1.82 2.52 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.707 r_dihedral_angle_3_deg 16.49 r_dihedral_angle_4_deg 15.991 r_scangle_it 8.147 r_scbond_it 5.829 r_dihedral_angle_1_deg 5.468 r_mcangle_it 4.716 r_mcbond_it 3.512 r_angle_refined_deg 1.314 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.707 r_dihedral_angle_3_deg 16.49 r_dihedral_angle_4_deg 15.991 r_scangle_it 8.147 r_scbond_it 5.829 r_dihedral_angle_1_deg 5.468 r_mcangle_it 4.716 r_mcbond_it 3.512 r_angle_refined_deg 1.314 r_nbtor_refined 0.301 r_xyhbond_nbd_refined 0.186 r_symmetry_hbond_refined 0.181 r_nbd_refined 0.166 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10527 Nucleic Acid Atoms Solvent Atoms 949 Heterogen Atoms 93
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing