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Crystal structure of multicopper oxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 0.1 M imidazole, 0.2 M CaOAc, 0.1 M CaCl2, 12% polyethyleneglycol 8000, pH 8.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.25 45.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.956 α = 90 b = 50.705 β = 107.86 c = 134.667 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.38 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 128 99.6 75847
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 128 75847 4013 99.53 0.19283 0.19116 0.22471 0.2441 RANDOM 25.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.22 0.74 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.661 r_dihedral_angle_4_deg 18.452 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_1_deg 6.119 r_scangle_it 2.322 r_scbond_it 1.475 r_angle_refined_deg 1.182 r_mcangle_it 1.022 r_mcbond_it 0.648 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.661 r_dihedral_angle_4_deg 18.452 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_1_deg 6.119 r_scangle_it 2.322 r_scbond_it 1.475 r_angle_refined_deg 1.182 r_mcangle_it 1.022 r_mcbond_it 0.648 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.128 r_xyhbond_nbd_refined 0.116 r_metal_ion_refined 0.102 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6816 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 15
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling