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isoxazole ligand bound to farnesoid X receptor (FXR)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.2M LiSO4, 25% PEG 3350, Hepes pH7.5, temperature 298K, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.97 58.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.749 α = 90 b = 158.749 β = 90 c = 158.749 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 100 0.078 38.41 11.2 5601
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 100 0.401 11.4 551
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 47.89 5597 350 100 0.242 0.238 0.2449 0.297 0.2286 RANDOM 79.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.357 r_dihedral_angle_3_deg 16.659 r_dihedral_angle_4_deg 15.222 r_dihedral_angle_1_deg 4.498 r_angle_refined_deg 1.023 r_scangle_it 0.834 r_angle_other_deg 0.713 r_mcangle_it 0.564 r_scbond_it 0.54 r_mcbond_it 0.527
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.357 r_dihedral_angle_3_deg 16.659 r_dihedral_angle_4_deg 15.222 r_dihedral_angle_1_deg 4.498 r_angle_refined_deg 1.023 r_scangle_it 0.834 r_angle_other_deg 0.713 r_mcangle_it 0.564 r_scbond_it 0.54 r_mcbond_it 0.527 r_nbd_refined 0.214 r_symmetry_vdw_other 0.192 r_nbtor_refined 0.18 r_nbd_other 0.16 r_symmetry_vdw_refined 0.14 r_xyhbond_nbd_refined 0.134 r_nbtor_other 0.085 r_chiral_restr 0.05 r_mcbond_other 0.039 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1840 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 39
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction