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Crystal structure of a protein with unknown function CT1051 from Chlorobium tepidum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.2M Lithium sulfate, 0.1M HEPES, 25% w/v PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.11 41.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.045 α = 90 b = 38.784 β = 95.06 c = 60.932 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM Q315r 2009-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 50 98.4 0.096 43.8 6.8 27829 27379 -3 25.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.66 1.67 59.4 0.826 1.9 3.7 425
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.66 50 26597 26597 1357 97.43 0.1818 0.1818 0.17929 0.2165 0.22632 0.246 RANDOM 17.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -0.76 1.02 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.488 r_dihedral_angle_4_deg 18.506 r_dihedral_angle_3_deg 15.554 r_sphericity_free 5.772 r_dihedral_angle_1_deg 5.413 r_scangle_it 4.873 r_scbond_it 3.176 r_sphericity_bonded 2.624 r_mcangle_it 2.049 r_rigid_bond_restr 1.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.488 r_dihedral_angle_4_deg 18.506 r_dihedral_angle_3_deg 15.554 r_sphericity_free 5.772 r_dihedral_angle_1_deg 5.413 r_scangle_it 4.873 r_scbond_it 3.176 r_sphericity_bonded 2.624 r_mcangle_it 2.049 r_rigid_bond_restr 1.858 r_angle_refined_deg 1.545 r_mcbond_it 1.244 r_chiral_restr 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1995 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 40
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM model building RESOLVE model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing