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CRYSTAL STRUCTURE OF A PUTATIVE NAD(P)H:FMN OXIDOREDUCTASE (SE1966) FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228 AT 2.00 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 NANODROP, 30.0% PEG 200, 5.0% PEG 3000, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.85 α = 90 b = 86.15 β = 90 c = 160.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-12-08 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97968 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.514 99.4 0.117 58789 -3 15.417
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.3 0.385 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 29.514 58726 2972 99.69 0.148 0.146 0.1581 0.185 0.1952 RANDOM 26.721
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.1 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_4_deg 16.093 r_dihedral_angle_3_deg 13.518 r_dihedral_angle_1_deg 5.448 r_scangle_it 4.841 r_scbond_it 3.494 r_mcangle_it 1.96 r_angle_refined_deg 1.375 r_mcbond_it 1.281 r_angle_other_deg 1.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_4_deg 16.093 r_dihedral_angle_3_deg 13.518 r_dihedral_angle_1_deg 5.448 r_scangle_it 4.841 r_scbond_it 3.494 r_mcangle_it 1.96 r_angle_refined_deg 1.375 r_mcbond_it 1.281 r_angle_other_deg 1.054 r_symmetry_vdw_refined 0.374 r_mcbond_other 0.358 r_nbd_refined 0.22 r_symmetry_vdw_other 0.212 r_nbd_other 0.193 r_nbtor_refined 0.181 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.094 r_metal_ion_refined 0.094 r_nbtor_other 0.088 r_symmetry_metal_ion_refined 0.077 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6721 Nucleic Acid Atoms Solvent Atoms 561 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing