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Phpd with cadmium complexed with hydroethylphosphonate (HEP)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 273 1 M sodium acetate, 100 mM Hepes pH 7.5, 50 mM Cadmium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.11 41.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.974 α = 90 b = 94.695 β = 90 c = 101.595 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 50 99.2 0.069 28.6 7.1 31537
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.92 1.99 92.5 0.29 5.1 6.1 2916
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 25 29741 1587 99.16 0.21398 0.21172 0.2107 0.25722 0.2578 RANDOM 26.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.48 3.55 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.648 r_dihedral_angle_4_deg 18.165 r_dihedral_angle_3_deg 15.62 r_dihedral_angle_1_deg 6.274 r_scangle_it 2.718 r_scbond_it 1.844 r_angle_refined_deg 1.225 r_mcangle_it 1.103 r_mcbond_it 0.71 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.648 r_dihedral_angle_4_deg 18.165 r_dihedral_angle_3_deg 15.62 r_dihedral_angle_1_deg 6.274 r_scangle_it 2.718 r_scbond_it 1.844 r_angle_refined_deg 1.225 r_mcangle_it 1.103 r_mcbond_it 0.71 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.236 r_metal_ion_refined 0.213 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.128 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3165 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 20
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling