☰ Navigation Tabs
Complex of GS-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with MANT-ITP and Mn
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TL7 PDB ENTRY 1TL7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 289 7.2-7.8% PEG8000, 0.5M NACL, 0.1M 2-morpholinoethanesulfonic acid, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.92 57.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.637 α = 90 b = 133.423 β = 90 c = 70.642 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Vertical focusing mirror, single crystal Si(311) bent monochromator (horizontal focusing) 2008-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97946 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.11 15 0.179 3 16674 16244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.11 3.21 0.345 1.7 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1TL7 3.11 15 16244 15822 847 81.36 0.24028 0.23688 0.2448 0.29376 0.2975 RANDOM 45.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.22 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.497 r_dihedral_angle_3_deg 16.474 r_dihedral_angle_4_deg 12.247 r_dihedral_angle_1_deg 4.33 r_angle_refined_deg 1.042 r_metal_ion_refined 0.425 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.497 r_dihedral_angle_3_deg 16.474 r_dihedral_angle_4_deg 12.247 r_dihedral_angle_1_deg 4.33 r_angle_refined_deg 1.042 r_metal_ion_refined 0.425 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.073 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5645 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 106
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling