☰ Navigation Tabs
Crystallographic analysis of cytochrome P450 cyp121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N40
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 277 Ammonium sulfate, seating drop, vapor diffusion, pH 6.5, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.63 53.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.373 α = 90 b = 77.373 β = 90 c = 264.05 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 CCD ADSC QUANTUM Q315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.997 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 67.27 100 0.078 21.9 12.2 93031 93031 1 12.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 99.9 0.347 5.3 8.4 13293
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1N40 1.4 38.7 88208 4676 99.92 0.16039 0.1588 0.1572 0.19024 0.1889 RANDOM 15.943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.722 r_dihedral_angle_4_deg 17.326 r_dihedral_angle_3_deg 12.624 r_dihedral_angle_1_deg 5.234 r_sphericity_free 4.787 r_sphericity_bonded 4.284 r_scangle_it 3.719 r_scbond_it 2.584 r_mcangle_it 1.797 r_angle_refined_deg 1.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.722 r_dihedral_angle_4_deg 17.326 r_dihedral_angle_3_deg 12.624 r_dihedral_angle_1_deg 5.234 r_sphericity_free 4.787 r_sphericity_bonded 4.284 r_scangle_it 3.719 r_scbond_it 2.584 r_mcangle_it 1.797 r_angle_refined_deg 1.411 r_rigid_bond_restr 1.409 r_mcbond_it 1.269 r_nbtor_refined 0.311 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.201 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.162 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3031 Nucleic Acid Atoms Solvent Atoms 774 Heterogen Atoms 63
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling