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EthR from Mycobacterium tuberculosis in complex with compound BDM14744
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.5 293 0.17M ammonium sulfate, 0.085M Na-cacodylate (pH 6.5), 15% glycerol, and 25% polyethylene glycol 8000, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.738 α = 90 b = 121.738 β = 90 c = 33.669 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 19.47 100 26494 26494
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.744 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.7 19.47 26494 26494 1394 100 0.23341 0.23341 0.23106 0.2275 0.27787 0.2728 RANDOM 18.021
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.757 r_dihedral_angle_4_deg 18.879 r_dihedral_angle_3_deg 14.926 r_sphericity_free 6.611 r_dihedral_angle_1_deg 4.966 r_scangle_it 3.72 r_sphericity_bonded 2.796 r_scbond_it 2.676 r_mcangle_it 1.903 r_rigid_bond_restr 1.709
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.757 r_dihedral_angle_4_deg 18.879 r_dihedral_angle_3_deg 14.926 r_sphericity_free 6.611 r_dihedral_angle_1_deg 4.966 r_scangle_it 3.72 r_sphericity_bonded 2.796 r_scbond_it 2.676 r_mcangle_it 1.903 r_rigid_bond_restr 1.709 r_angle_refined_deg 1.363 r_mcbond_it 1.348 r_nbtor_refined 0.3 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1510 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 18
Software Software Software Name Purpose CCP4 model building REFMAC refinement XDS data reduction XDS data scaling CCP4 phasing