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Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 25% PEG 3350, 0.2M Ammonium sulfate, 0.1M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.332 α = 90 b = 155.057 β = 92 c = 72.44 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.1 0.09 0.09 23.5 4.9 32197 32197 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 98.5 0.569 0.569 2.8 5 1563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.71 50 30555 30555 1627 98.85 0.22712 0.22712 0.22435 0.2313 0.27899 0.2902 RANDOM 26.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -0.8 -0.76 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.037 r_dihedral_angle_4_deg 20.643 r_dihedral_angle_3_deg 17.772 r_dihedral_angle_1_deg 5.597 r_scangle_it 2.577 r_scbond_it 1.536 r_angle_other_deg 1.522 r_mcangle_it 1.32 r_angle_refined_deg 1.241 r_mcbond_it 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.037 r_dihedral_angle_4_deg 20.643 r_dihedral_angle_3_deg 17.772 r_dihedral_angle_1_deg 5.597 r_scangle_it 2.577 r_scbond_it 1.536 r_angle_other_deg 1.522 r_mcangle_it 1.32 r_angle_refined_deg 1.241 r_mcbond_it 0.82 r_mcbond_other 0.156 r_chiral_restr 0.061 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8268 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 10
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXD phasing SHELXE model building RESOLVE model building Coot model building MLPHARE phasing DM model building ARP/wARP model building CCP4 model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling RESOLVE phasing DM phasing CCP4 phasing