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Acidic Mammalian Chinase, Catalytic Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 15% PEG 3350, 120 mM ammonium sulfate, 60 mM sodium acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.03 39.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.941 α = 90 b = 92.36 β = 95.92 c = 111.669 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2004-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.8 0.127 9.77 3.8 93507 91479 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 90602 88718 4695 97.92 0.19868 0.19868 0.1971 0.22838 0.1995 RANDOM 10.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.36 -0.65 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_4_deg 17.41 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.193 r_scangle_it 1.438 r_angle_refined_deg 1.06 r_scbond_it 0.939 r_mcangle_it 0.61 r_mcbond_it 0.378 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_4_deg 17.41 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.193 r_scangle_it 1.438 r_angle_refined_deg 1.06 r_scbond_it 0.939 r_mcangle_it 0.61 r_mcbond_it 0.378 r_nbtor_refined 0.302 r_nbd_refined 0.179 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.1 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11947 Nucleic Acid Atoms Solvent Atoms 497 Heterogen Atoms
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling