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Porcine aldehyde reductase in ternary complex with inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CV7 PDB ENTRY 3CV7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 2M ammonium sulphate, 0.1M tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.35 α = 90 b = 67.35 β = 90 c = 246.25 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.773354 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 47.57 97.8 26.8 19.7 23667 1 2 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.1 99.7 0.525 8.3 18.3 3296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CV7 1.99 41.04 2 1 23667 21957 1150 97.71 0.19432 0.19157 0.1942 0.24647 0.192 RANDOM 16.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.84 0.42 0.84 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.56 r_dihedral_angle_3_deg 12.818 r_dihedral_angle_4_deg 9.66 r_dihedral_angle_1_deg 6.142 r_scangle_it 1.918 r_angle_refined_deg 1.545 r_scbond_it 1.332 r_mcangle_it 0.954 r_mcbond_it 0.57 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.56 r_dihedral_angle_3_deg 12.818 r_dihedral_angle_4_deg 9.66 r_dihedral_angle_1_deg 6.142 r_scangle_it 1.918 r_angle_refined_deg 1.545 r_scbond_it 1.332 r_mcangle_it 0.954 r_mcbond_it 0.57 r_nbtor_refined 0.303 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.151 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2598 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 88
Software Software Software Name Purpose Blu-Ice data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling