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Human kynurenine aminotransferase I in complex with tris
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W7L PDB entry 1W7L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 299 22@ PEG 4000, Sodium acetate 0.2 M, Tris 0.1 M, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 299K
Crystal Properties Matthews coefficient Solvent content 2.16 43.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.881 α = 90 b = 107.439 β = 112.87 c = 81.686 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 0.076 36.7 7.3 129473
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 0.59 3.8 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1W7L 1.5 29.04 121582 6430 98.62 0.17952 0.17842 0.20035 0.1941 RANDOM 16.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.457 r_dihedral_angle_4_deg 14.559 r_dihedral_angle_3_deg 12.405 r_dihedral_angle_1_deg 5.711 r_scangle_it 3.15 r_scbond_it 1.986 r_angle_refined_deg 1.285 r_mcangle_it 1.219 r_mcbond_it 0.646 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.457 r_dihedral_angle_4_deg 14.559 r_dihedral_angle_3_deg 12.405 r_dihedral_angle_1_deg 5.711 r_scangle_it 3.15 r_scbond_it 1.986 r_angle_refined_deg 1.285 r_mcangle_it 1.219 r_mcbond_it 0.646 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.197 r_metal_ion_refined 0.119 r_symmetry_hbond_refined 0.117 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6738 Nucleic Acid Atoms Solvent Atoms 664 Heterogen Atoms 10
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALA data scaling