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Crystal structure of OppA in a open conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.2M NaCl, 0.1M Na-Hepes, 20% PEG 6000, pH 7.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.577 α = 90 b = 122.287 β = 102.05 c = 59.408 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Q210r 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.979 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 50 99.8 0.083 44.886 6.2 22117
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.38 2.47 100 0.158 6 2238
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.38 21.23 22093 1128 99.44 0.214 0.211 0.2127 0.276 0.2721 RANDOM 35.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.63 -1.16 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.282 r_dihedral_angle_4_deg 12.979 r_dihedral_angle_3_deg 12.559 r_dihedral_angle_1_deg 4.99 r_scangle_it 0.696 r_angle_refined_deg 0.642 r_angle_other_deg 0.503 r_scbond_it 0.431 r_mcangle_it 0.308 r_mcbond_it 0.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.282 r_dihedral_angle_4_deg 12.979 r_dihedral_angle_3_deg 12.559 r_dihedral_angle_1_deg 4.99 r_scangle_it 0.696 r_angle_refined_deg 0.642 r_angle_other_deg 0.503 r_scbond_it 0.431 r_mcangle_it 0.308 r_mcbond_it 0.161 r_chiral_restr 0.04 r_mcbond_other 0.016 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4354 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling