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S. aureus DHFR complexed with NADPH and iclaprim
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG 3350, 200mM NaCl, 100mM bis-Tris, pH5.5
Crystal Properties Matthews coefficient Solvent content 2.7 54.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.279 α = 90 b = 79.279 β = 90 c = 108.165 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 98 11864 11864 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.23 88.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 20 9498 466 93.12 0.23048 0.22773 0.3103 0.28741 0.3062 RANDOM 37.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.35 -0.7 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.345 r_dihedral_angle_3_deg 20.263 r_dihedral_angle_4_deg 13.77 r_dihedral_angle_1_deg 12.021 r_angle_refined_deg 1.405 r_angle_other_deg 0.873 r_mcangle_it 0.688 r_symmetry_hbond_refined 0.585 r_mcbond_it 0.578 r_symmetry_vdw_other 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.345 r_dihedral_angle_3_deg 20.263 r_dihedral_angle_4_deg 13.77 r_dihedral_angle_1_deg 12.021 r_angle_refined_deg 1.405 r_angle_other_deg 0.873 r_mcangle_it 0.688 r_symmetry_hbond_refined 0.585 r_mcbond_it 0.578 r_symmetry_vdw_other 0.47 r_scangle_it 0.445 r_symmetry_vdw_refined 0.348 r_scbond_it 0.277 r_nbd_other 0.262 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.229 r_nbtor_refined 0.204 r_nbtor_other 0.092 r_xyhbond_nbd_other 0.086 r_mcbond_other 0.067 r_chiral_restr 0.045 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1281 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 74
Software Software Software Name Purpose DENZO data reduction AMoRE phasing REFMAC refinement SCALEPACK data scaling