3FRF

S. aureus DHFR complexed with NADPH and iclaprim


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.525% PEG 3350, 200mM NaCl, 100mM bis-Tris, pH5.5
Crystal Properties
Matthews coefficientSolvent content
2.754.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.279α = 90
b = 79.279β = 90
c = 108.165γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.12098118641186411
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2388.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.220949846693.120.230480.227730.28741RANDOM37.346
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7-0.35-0.71.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.345
r_dihedral_angle_3_deg20.263
r_dihedral_angle_4_deg13.77
r_dihedral_angle_1_deg12.021
r_angle_refined_deg1.405
r_angle_other_deg0.873
r_mcangle_it0.688
r_symmetry_hbond_refined0.585
r_mcbond_it0.578
r_symmetry_vdw_other0.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.345
r_dihedral_angle_3_deg20.263
r_dihedral_angle_4_deg13.77
r_dihedral_angle_1_deg12.021
r_angle_refined_deg1.405
r_angle_other_deg0.873
r_mcangle_it0.688
r_symmetry_hbond_refined0.585
r_mcbond_it0.578
r_symmetry_vdw_other0.47
r_scangle_it0.445
r_symmetry_vdw_refined0.348
r_scbond_it0.277
r_nbd_other0.262
r_xyhbond_nbd_refined0.23
r_nbd_refined0.229
r_nbtor_refined0.204
r_nbtor_other0.092
r_xyhbond_nbd_other0.086
r_mcbond_other0.067
r_chiral_restr0.045
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1281
Nucleic Acid Atoms
Solvent Atoms142
Heterogen Atoms74

Software

Software
Software NamePurpose
DENZOdata reduction
AMoREphasing
REFMACrefinement
SCALEPACKdata scaling