☰ Navigation Tabs
Crystal structure of NtrC-like two-domain protein (RER070207001320) from Eubacterium rectale at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.57 293 2.1M ammonium sulfate, 2.25% polyethylene glycol 400, 15.0% Glycerol, 0.1M HEPES pH 7.57, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.09 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.506 α = 90 b = 79.495 β = 96.16 c = 55.022 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-11-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97908,0.97845 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.161 99.8 0.085 0.085 5.832 3.2 30416 36.83
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100 0.627 0.627 1.2 3.2 2258
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.161 30416 1535 99.78 0.191 0.19 0.1916 0.218 0.2197 RANDOM 38.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.36 0.84 3.46 -1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_3_deg 13.714 r_dihedral_angle_4_deg 9.848 r_scangle_it 7.478 r_dihedral_angle_1_deg 5.844 r_scbond_it 5.077 r_mcangle_it 2.663 r_mcbond_it 1.5 r_angle_refined_deg 1.381 r_angle_other_deg 0.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_3_deg 13.714 r_dihedral_angle_4_deg 9.848 r_scangle_it 7.478 r_dihedral_angle_1_deg 5.844 r_scbond_it 5.077 r_mcangle_it 2.663 r_mcbond_it 1.5 r_angle_refined_deg 1.381 r_angle_other_deg 0.985 r_mcbond_other 0.399 r_chiral_restr 0.074 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2754 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing