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Structure of the Ebola VP35 Interferon Inhibitory Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 Well solution: 200 mM Sodium Citrate (pH 5.8),11% (W/V) PEG 4000; protein solution: 20 mM Tris-Cl (pH 7.0),50 mM NaCl, 5mM beta-mercaptoethanol, Vapor Diffusion, Hanging Drop, Temperature 298K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.16 43.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.49 α = 90 b = 66.21 β = 90 c = 72.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2008-04-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.9792, 0.9795, 0.9643 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 41.91 99.7 0.061 11 6.65 47946 47946 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 98.8 0.441 2.4 4.91 4615
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 5 47946 47946 4829 100 0.20159 0.20159 0.19766 0.205 0.23647 0.2404 RANDOM 14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 1.19 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.178 r_dihedral_angle_4_deg 20.213 r_dihedral_angle_3_deg 13.038 r_sphericity_free 8.379 r_scangle_it 4.96 r_dihedral_angle_1_deg 4.919 r_sphericity_bonded 4.098 r_scbond_it 3.759 r_rigid_bond_restr 2.497 r_mcangle_it 2.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.178 r_dihedral_angle_4_deg 20.213 r_dihedral_angle_3_deg 13.038 r_sphericity_free 8.379 r_scangle_it 4.96 r_dihedral_angle_1_deg 4.919 r_sphericity_bonded 4.098 r_scbond_it 3.759 r_rigid_bond_restr 2.497 r_mcangle_it 2.317 r_mcbond_it 1.876 r_angle_refined_deg 1.584 r_angle_other_deg 0.954 r_mcbond_other 0.71 r_symmetry_vdw_other 0.27 r_nbd_refined 0.238 r_nbd_other 0.188 r_symmetry_hbond_refined 0.185 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.101 r_symmetry_vdw_refined 0.099 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1938 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection SOLVE phasing RESOLVE model building REFMAC refinement d*TREK data reduction d*TREK data scaling RESOLVE phasing