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LpxR from Salmonella typhimurium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 291 14% PEG 6000 (w/v), 10% glycerol (v/v), 50mM Tris-HCl, 5mM zinc chloride, pH 8.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.19 61.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.93 α = 90 b = 127.65 β = 90 c = 60.66 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal mirror 2007-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.74 100 0.159 14.7 14.9 66242 66190 16.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.805 3.6 15 9516
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD and DMMULTI using P21212 and P2 crystal THROUGHOUT 1.9 48.74 66190 62825 3357 99.99 0.19266 0.1907 0.1912 0.22959 0.2289 RANDOM 17.925
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 -0.68 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.843 r_dihedral_angle_4_deg 17.098 r_dihedral_angle_3_deg 12.866 r_dihedral_angle_1_deg 7.26 r_scangle_it 3.432 r_scbond_it 2.374 r_angle_refined_deg 1.536 r_mcangle_it 1.407 r_mcbond_it 0.89 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.843 r_dihedral_angle_4_deg 17.098 r_dihedral_angle_3_deg 12.866 r_dihedral_angle_1_deg 7.26 r_scangle_it 3.432 r_scbond_it 2.374 r_angle_refined_deg 1.536 r_mcangle_it 1.407 r_mcbond_it 0.89 r_nbtor_refined 0.301 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.2 r_metal_ion_refined 0.185 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.108 r_symmetry_metal_ion_refined 0.061 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4588 Nucleic Acid Atoms Solvent Atoms 414 Heterogen Atoms 187
Software Software Software Name Purpose SHELXCD phasing SHELXE model building REFMAC refinement XDS data reduction SCALA data scaling