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Crystal structure of putative flavin reductase with split barrel domain (YP_750721.1) from SHEWANELLA FRIGIDIMARINA NCIMB 400 at 1.74 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.2000M Ca(OAc)2, 20.0000% PEG-3000, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.02 39.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.351 α = 90 b = 65.502 β = 90 c = 96.791 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.94645,0.97967 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 27.929 99.7 0.089 0.089 11.8 3.6 19361 18.592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.79 96.9 0.589 0.589 1.8 3.2 1346
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.74 27.929 19333 988 99.74 0.169 0.167 0.214 0.2426 RANDOM 24.627
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 1.45 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.32 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 10.449 r_scangle_it 6.561 r_scbond_it 4.998 r_dihedral_angle_1_deg 4.679 r_mcangle_it 3.261 r_mcbond_it 2.315 r_angle_refined_deg 1.68 r_angle_other_deg 1.016
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.32 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 10.449 r_scangle_it 6.561 r_scbond_it 4.998 r_dihedral_angle_1_deg 4.679 r_mcangle_it 3.261 r_mcbond_it 2.315 r_angle_refined_deg 1.68 r_angle_other_deg 1.016 r_mcbond_other 0.681 r_symmetry_hbond_refined 0.239 r_symmetry_vdw_refined 0.235 r_xyhbond_nbd_refined 0.224 r_symmetry_vdw_other 0.217 r_nbd_refined 0.214 r_nbd_other 0.181 r_nbtor_refined 0.177 r_symmetry_hbond_other 0.139 r_metal_ion_refined 0.128 r_xyhbond_nbd_other 0.104 r_nbtor_other 0.09 r_chiral_restr 0.059 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1498 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing