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Crystal Structure of 11beta-Hydroxysteroid Dehydrogenase 1 (11b-HSD1) in Complex with Benzamide Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 289 36% P400, 0.1 M Tris 8.5, vapor diffusion, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.95 68.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.185 α = 90 b = 109.185 β = 90 c = 135.869 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 3X3 CCD ARRAY 2005-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 94.557 99.4 0.064 0.064 7.187 6.9 27575 2 78.93
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.65 2.79 100 0.361 0.361 2 7.1 4010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 94.49 2 27778 27430 1378 98.88 0.224 0.222 0.2188 0.254 0.2538 RANDOM 65.341
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.47 1.24 2.47 -3.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.073 r_dihedral_angle_3_deg 19.851 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_1_deg 6.622 r_scangle_it 3.542 r_scbond_it 2.13 r_angle_refined_deg 2.035 r_mcangle_it 1.588 r_mcbond_it 0.843 r_chiral_restr 0.168
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.073 r_dihedral_angle_3_deg 19.851 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_1_deg 6.622 r_scangle_it 3.542 r_scbond_it 2.13 r_angle_refined_deg 2.035 r_mcangle_it 1.588 r_mcbond_it 0.843 r_chiral_restr 0.168 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4123 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 154
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction BOS data collection