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Crystal structure of ORF140 of the archaeal virus Acidianus Filamentous Virus 1 (AFV1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 17% PEG 550 MME, 0.1M Sodium Cacodylate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.158 α = 90 b = 81.15 β = 90 c = 119.898 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.978 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 99.3 0.1 0.1 14.9 7.4 25779 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 96 0.36 0.36 3.7 5.2 3569
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 15 24567 1047 99.29 0.1882 0.18539 0.25475 0.2502 RANDOM 25.815
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.31 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.247 r_dihedral_angle_3_deg 13.505 r_dihedral_angle_4_deg 11.592 r_dihedral_angle_1_deg 6.98 r_scangle_it 2.828 r_scbond_it 1.853 r_angle_refined_deg 1.346 r_mcangle_it 1.019 r_mcbond_it 0.631 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.247 r_dihedral_angle_3_deg 13.505 r_dihedral_angle_4_deg 11.592 r_dihedral_angle_1_deg 6.98 r_scangle_it 2.828 r_scbond_it 1.853 r_angle_refined_deg 1.346 r_mcangle_it 1.019 r_mcbond_it 0.631 r_nbtor_refined 0.3 r_xyhbond_nbd_refined 0.247 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3992 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 162
Software Software Software Name Purpose SHELXS phasing REFMAC refinement MOSFLM data reduction SCALA data scaling