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Crystal structure of myeloperoxidase from human leukocytes
Crystallization Crystal Properties Matthews coefficient Solvent content 2.96 58.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.74 α = 90 b = 110.74 β = 90 c = 255.333 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.0000 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.93 50 33805 33805
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.93 20 31861 1707 96.21 0.23714 0.23608 0.2734 0.25715 0.2897 RANDOM 67.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 -0.89 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.156 r_dihedral_angle_3_deg 13.682 r_dihedral_angle_4_deg 10.951 r_dihedral_angle_1_deg 4.648 r_angle_refined_deg 0.987 r_nbtor_refined 0.295 r_scangle_it 0.254 r_symmetry_vdw_refined 0.191 r_nbd_refined 0.15 r_scbond_it 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.156 r_dihedral_angle_3_deg 13.682 r_dihedral_angle_4_deg 10.951 r_dihedral_angle_1_deg 4.648 r_angle_refined_deg 0.987 r_nbtor_refined 0.295 r_scangle_it 0.254 r_symmetry_vdw_refined 0.191 r_nbd_refined 0.15 r_scbond_it 0.15 r_xyhbond_nbd_refined 0.092 r_mcangle_it 0.092 r_symmetry_hbond_refined 0.061 r_chiral_restr 0.057 r_mcbond_it 0.051 r_metal_ion_refined 0.015 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9187 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 296
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement SCALEPACK data scaling DENZO data reduction