3F85

Structure of fusion complex of homo trimeric major pilin subunits CfaB of CFA/I fimbirae from ETEC E. coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION3.5the CfaBBB protein (10 mg/ml in 20 mM Tri-HCl, pH 7.5, 100 mM NaCl) is crystallized by mixing in 1:1 ratio with 22% PEG 4000, 100 mM ammonium sulfate, 100 mM sodium citrate at pH 3.5, 1% ethylene glycol, 2% PEG 400, 1% iso-propanol, 10 mM MgCl2, 0.3% 1,2,3 heptanetriol; VAPOR DIFFUSION
Crystal Properties
Matthews coefficientSolvent content
2.3848.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.406α = 90
b = 44.982β = 125.35
c = 97.88γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-IDAPS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.12025005
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.12023716124393.360.235780.2330.28301RANDOM62.294
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-6.99-3.454.27-1.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.593
r_dihedral_angle_3_deg15.011
r_dihedral_angle_1_deg6.268
r_scangle_it4.257
r_dihedral_angle_4_deg4.056
r_scbond_it3.054
r_mcangle_it1.864
r_angle_refined_deg1.42
r_mcbond_it1.191
r_nbtor_refined0.267
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.593
r_dihedral_angle_3_deg15.011
r_dihedral_angle_1_deg6.268
r_scangle_it4.257
r_dihedral_angle_4_deg4.056
r_scbond_it3.054
r_mcangle_it1.864
r_angle_refined_deg1.42
r_mcbond_it1.191
r_nbtor_refined0.267
r_symmetry_vdw_refined0.179
r_nbd_refined0.145
r_chiral_restr0.115
r_xyhbond_nbd_refined0.111
r_symmetry_hbond_refined0.087
r_bond_refined_d0.019
r_gen_planes_refined0.015
r_metal_ion_refined0.015
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3288
Nucleic Acid Atoms
Solvent Atoms108
Heterogen Atoms4

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling