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Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor C-MET in complex with N-(4-(2-amino-3-chloropyridin-4-yloxy)-3-fluorophenyl)-4-ethoxy-1-(4-fluorophenyl)-2-oxo-1,2-dihydropyridine-3-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other MET KINASE COMPLEXED WITH BMS-758982
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.1 12% MEPEG 5000, 0.1M HEPES (PH 7.1) 11% 2-PROPANOL
Crystal Properties Matthews coefficient Solvent content 2.23 44.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.67 α = 90 b = 46.883 β = 90 c = 157.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 99.4 0.079 17.3 4.3 11610 39.628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 97.2 0.275 4.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MET KINASE COMPLEXED WITH BMS-758982 2.5 16.54 11431 11431 547 99.31 0.1834 0.1834 0.18 0.1807 0.2533 0.2566 RANDOM 30.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.44456646 -0.2538769 -3.19068956
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 21.361 t_it 1.319 t_angle_deg 0.868 t_nbd 0.032 t_gen_planes 0.01 t_bond_d 0.006 t_trig_c_planes 0.006 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2169 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 36
Software Software Software Name Purpose AMoRE phasing BUSTER-TNT refinement HKL-2000 data reduction HKL-2000 data scaling