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Crystal structure of the regulatory domain of LiCMS in complexed with isoleucine - type II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 0.1M Tris-HCl, pH8.0, 1.6M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.11 41.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.315 α = 90 b = 97.943 β = 91.38 c = 39.974 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-03-24 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2007-03-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.9789, 0.9796, 0.9643 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 20 0.076 3.8 15916
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 0.327 3.6 5456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 20 15562 794 97.78 0.227 0.226 0.2296 0.263 0.2306 RANDOM 33.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 -0.01 -1.77 3.87
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.399 r_dihedral_angle_1_deg 2.693 r_mcangle_it 2.523 r_rigid_bond_restr 2.381 r_scbond_it 2.278 r_angle_refined_deg 1.557 r_mcbond_it 1.441 r_symmetry_vdw_refined 0.348 r_nbd_refined 0.287 r_symmetry_hbond_refined 0.208
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.399 r_dihedral_angle_1_deg 2.693 r_mcangle_it 2.523 r_rigid_bond_restr 2.381 r_scbond_it 2.278 r_angle_refined_deg 1.557 r_mcbond_it 1.441 r_symmetry_vdw_refined 0.348 r_nbd_refined 0.287 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.099 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1827 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection CrystalClear data reduction CrystalClear data scaling CNS phasing