☰ Navigation Tabs
Crystal Structure of Synaptotagmin I C2A domain with Mn(II)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 2.0M Li2SO4, 100mM Tris, pH 7.5, vapor diffusion, hanging drop, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.19 43.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.549 α = 90 b = 38.512 β = 98.7 c = 44.058 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 100 98.3 0.108 18.261 5.4 26922
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 94.1 0.153 3.2 2558
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 20.54 26687 1337 97.25 0.194 0.192 0.191 0.228 0.2243 RANDOM 18.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.913 r_dihedral_angle_3_deg 8.561 r_dihedral_angle_4_deg 5.478 r_dihedral_angle_1_deg 3.963 r_sphericity_bonded 2.551 r_mcangle_it 2.045 r_scangle_it 1.784 r_sphericity_free 1.75 r_mcbond_it 1.311 r_scbond_it 1.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.913 r_dihedral_angle_3_deg 8.561 r_dihedral_angle_4_deg 5.478 r_dihedral_angle_1_deg 3.963 r_sphericity_bonded 2.551 r_mcangle_it 2.045 r_scangle_it 1.784 r_sphericity_free 1.75 r_mcbond_it 1.311 r_scbond_it 1.185 r_angle_refined_deg 1.153 r_rigid_bond_restr 1.071 r_nbtor_refined 0.319 r_nbd_refined 0.264 r_symmetry_vdw_refined 0.234 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.079 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1084 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling