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Crystal structure of acetyltransferase from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 289 0.1 M lithium Chloride 25% Peg 6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.197 α = 90 b = 52.408 β = 92.5 c = 47.514 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 MIRROR 2008-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 98.6 0.048 26.3 3.8 14476 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 94.9 0.194 4.8 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 14457 13727 733 97.73 0.17825 0.17604 0.2123 0.21899 0.2553 RANDOM 8.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 2.4 -1.73 1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.316 r_dihedral_angle_4_deg 14.095 r_dihedral_angle_3_deg 13.809 r_dihedral_angle_1_deg 6.26 r_scangle_it 3.702 r_scbond_it 2.318 r_angle_refined_deg 1.589 r_mcangle_it 1.446 r_angle_other_deg 0.947 r_mcbond_it 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.316 r_dihedral_angle_4_deg 14.095 r_dihedral_angle_3_deg 13.809 r_dihedral_angle_1_deg 6.26 r_scangle_it 3.702 r_scbond_it 2.318 r_angle_refined_deg 1.589 r_mcangle_it 1.446 r_angle_other_deg 0.947 r_mcbond_it 0.877 r_mcbond_other 0.265 r_chiral_restr 0.108 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1229 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 30
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELX model building Coot model building MLPHARE phasing CCP4 model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing CCP4 phasing