3EXN

Crystal structure of acetyltransferase from Thermus thermophilus HB8


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.52890.1 M lithium Chloride 25% Peg 6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.2244.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.197α = 90
b = 52.408β = 92.5
c = 47.514γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3MIRROR2008-10-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BMAPS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.83098.60.04826.33.8144762
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8394.90.1944.83.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.830144571372773397.730.178250.176040.21899RANDOM8.301
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.282.4-1.731.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.316
r_dihedral_angle_4_deg14.095
r_dihedral_angle_3_deg13.809
r_dihedral_angle_1_deg6.26
r_scangle_it3.702
r_scbond_it2.318
r_angle_refined_deg1.589
r_mcangle_it1.446
r_angle_other_deg0.947
r_mcbond_it0.877
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.316
r_dihedral_angle_4_deg14.095
r_dihedral_angle_3_deg13.809
r_dihedral_angle_1_deg6.26
r_scangle_it3.702
r_scbond_it2.318
r_angle_refined_deg1.589
r_mcangle_it1.446
r_angle_other_deg0.947
r_mcbond_it0.877
r_mcbond_other0.265
r_chiral_restr0.108
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1229
Nucleic Acid Atoms
Solvent Atoms108
Heterogen Atoms30

Software

Software
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
SHELXmodel building
Cootmodel building
MLPHAREphasing
CCP4model building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
SHELXphasing
CCP4phasing