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Structure of the redox sensor domain of Methylococcus capsulatus (Bath) MmoS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 Ammonium phosphate and glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.59 73.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.71 α = 90 b = 146.71 β = 90 c = 43.6 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-03-19 SINGLE WAVELENGTH 2 1 CCD MARMOSAIC 300 mm CCD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.00 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 40.8 95.2 0.073 33.314 12.3 17002
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 3.03 81.6 0.23 7.2 1113
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.34 40.8 17002 852 81.56 0.24 0.238 0.245 0.283 0.2865 RANDOM 56.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 -1.13 2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.136 r_dihedral_angle_3_deg 22.778 r_dihedral_angle_4_deg 21.02 r_dihedral_angle_1_deg 10.873 r_scangle_it 5.016 r_scbond_it 3.23 r_angle_refined_deg 2.969 r_mcangle_it 2.437 r_mcbond_it 1.442 r_symmetry_hbond_refined 0.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.136 r_dihedral_angle_3_deg 22.778 r_dihedral_angle_4_deg 21.02 r_dihedral_angle_1_deg 10.873 r_scangle_it 5.016 r_scbond_it 3.23 r_angle_refined_deg 2.969 r_mcangle_it 2.437 r_mcbond_it 1.442 r_symmetry_hbond_refined 0.601 r_symmetry_vdw_refined 0.373 r_nbtor_refined 0.32 r_nbd_refined 0.318 r_xyhbond_nbd_refined 0.247 r_chiral_restr 0.206 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1793 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing