☰ Navigation Tabs
Crystal structure of NTF2-like protein of unknown function (YP_001812677.1) from EXIGUOBACTERIUM SP. 255-15 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.2000M NaCl, 30.0000% PEG-3000, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.03 39.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.68 α = 90 b = 91.68 β = 90 c = 33.96 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-08-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97920 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.514 98.8 0.039 12.44 40169 -3 17.153
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 97 0.425 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.514 40122 2014 99.68 0.178 0.176 0.1828 0.209 0.2146 RANDOM 19.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.28 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.321 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.12 r_scangle_it 5.216 r_dihedral_angle_1_deg 4.587 r_scbond_it 3.917 r_mcangle_it 2.402 r_mcbond_it 1.68 r_angle_refined_deg 1.593 r_angle_other_deg 0.992
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.321 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.12 r_scangle_it 5.216 r_dihedral_angle_1_deg 4.587 r_scbond_it 3.917 r_mcangle_it 2.402 r_mcbond_it 1.68 r_angle_refined_deg 1.593 r_angle_other_deg 0.992 r_mcbond_other 0.31 r_symmetry_vdw_refined 0.251 r_symmetry_vdw_other 0.229 r_nbd_refined 0.22 r_nbd_other 0.204 r_nbtor_refined 0.187 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.108 r_nbtor_other 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1882 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHARP phasing