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CRYSTAL STRUCTURE OF A FIC FAMILY PROTEIN (SO_4266) FROM SHEWANELLA ONEIDENSIS AT 1.6 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.1 277 0.2M NaF, 20.0% PEG-3350, No Buffer pH 7.1, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.21 α = 90 b = 80.3 β = 90 c = 141 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97905,0.97935 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.553 98.7 0.042 13.83 106471 -3 19.465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 98.7 0.524 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 29.553 106418 5304 99.32 0.17 0.168 0.1743 0.197 0.2034 RANDOM 23.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 -0.94 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.878 r_dihedral_angle_3_deg 10.687 r_dihedral_angle_4_deg 10.261 r_scangle_it 6.642 r_scbond_it 4.889 r_dihedral_angle_1_deg 3.889 r_mcangle_it 2.803 r_mcbond_it 2.246 r_angle_refined_deg 1.636 r_angle_other_deg 1.035
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.878 r_dihedral_angle_3_deg 10.687 r_dihedral_angle_4_deg 10.261 r_scangle_it 6.642 r_scbond_it 4.889 r_dihedral_angle_1_deg 3.889 r_mcangle_it 2.803 r_mcbond_it 2.246 r_angle_refined_deg 1.636 r_angle_other_deg 1.035 r_mcbond_other 0.575 r_nbd_refined 0.225 r_symmetry_vdw_other 0.215 r_symmetry_vdw_refined 0.206 r_nbd_other 0.189 r_nbtor_refined 0.183 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.108 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5810 Nucleic Acid Atoms Solvent Atoms 814 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SOLVE phasing