3ELY

Wesselsbron virus Methyltransferase in complex with AdoHcy


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729327% PEG 4000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.244.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.715α = 90
b = 66.436β = 90
c = 91.055γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2007-04-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.453.799.60.08618.75.81287112259
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.42.51000.2166.761859

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3ELU2.445.55122201163958699.250.190180.190180.186960.25639RANDOM30.835
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.83-0.34-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.032
r_dihedral_angle_4_deg17.425
r_dihedral_angle_3_deg17.09
r_scangle_it5.814
r_dihedral_angle_1_deg5.053
r_scbond_it4.068
r_mcangle_it2.511
r_mcbond_it1.469
r_angle_refined_deg1.088
r_nbtor_refined0.294
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.032
r_dihedral_angle_4_deg17.425
r_dihedral_angle_3_deg17.09
r_scangle_it5.814
r_dihedral_angle_1_deg5.053
r_scbond_it4.068
r_mcangle_it2.511
r_mcbond_it1.469
r_angle_refined_deg1.088
r_nbtor_refined0.294
r_nbd_refined0.178
r_xyhbond_nbd_refined0.156
r_symmetry_vdw_refined0.152
r_symmetry_hbond_refined0.146
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2095
Nucleic Acid Atoms
Solvent Atoms95
Heterogen Atoms58

Software

Software
Software NamePurpose
MOSFLMdata reduction
MOLREPphasing
REFMACrefinement
SCALAdata scaling