3ELK

Crystal structure of putative transcriptional regulator TA0346 from Thermoplasma acidophilum


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.2M AMMONIUM SULFATE, 0.1M NA SULFATE PH4.6, 30% PEG 4K, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8533.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.515α = 90
b = 45.707β = 90
c = 207.679γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRROR2008-07-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9793APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75092.50.0640.06440.6465.42123321233-330.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.73880.4520.4522.63.61004

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7502112621126109992.390.2040.2040.2020.241RANDOM27.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.090.32-3.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.997
r_dihedral_angle_3_deg15.495
r_dihedral_angle_4_deg6.143
r_scangle_it5.282
r_dihedral_angle_1_deg4.968
r_scbond_it3.912
r_angle_other_deg3.323
r_angle_refined_deg2.033
r_mcangle_it1.881
r_mcbond_it1.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.997
r_dihedral_angle_3_deg15.495
r_dihedral_angle_4_deg6.143
r_scangle_it5.282
r_dihedral_angle_1_deg4.968
r_scbond_it3.912
r_angle_other_deg3.323
r_angle_refined_deg2.033
r_mcangle_it1.881
r_mcbond_it1.104
r_mcbond_other0.398
r_chiral_restr0.121
r_bond_refined_d0.023
r_gen_planes_refined0.01
r_bond_other_d0.009
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1630
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms2

Software

Software
Software NamePurpose
HKL-2000data collection
HKL-3000phasing
MLPHAREphasing
DMmodel building
SHELXDphasing
SHELXEmodel building
RESOLVEmodel building
ARP/wARPmodel building
CCP4model building
REFMACrefinement
Cootmodel building
HKL-3000data reduction
HKL-3000data scaling
DMphasing
RESOLVEphasing
CCP4phasing