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Crystal structure of the inhibitor Atazanavir (ATV) in complex with a multi-drug resistance HIV-1 protease variant (L10I/G48V/I54V/V64I/V82A) Refer: FLAP+ in citation.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.245 α = 90 b = 58.483 β = 90 c = 61.326 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 133 IMAGE PLATE RIGAKU RAXIS IV 2004-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.33 96.6 0.033 17.1 24185 24185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 42.33 24139 1236 96.56 0.189 0.187 0.1984 0.223 0.2354 RANDOM 23.955
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.44 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.825 r_dihedral_angle_4_deg 16.044 r_dihedral_angle_3_deg 12.496 r_dihedral_angle_1_deg 6.106 r_scangle_it 2.329 r_scbond_it 1.609 r_angle_refined_deg 1.392 r_mcangle_it 0.891 r_mcbond_it 0.786 r_angle_other_deg 0.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.825 r_dihedral_angle_4_deg 16.044 r_dihedral_angle_3_deg 12.496 r_dihedral_angle_1_deg 6.106 r_scangle_it 2.329 r_scbond_it 1.609 r_angle_refined_deg 1.392 r_mcangle_it 0.891 r_mcbond_it 0.786 r_angle_other_deg 0.782 r_symmetry_hbond_refined 0.25 r_nbd_refined 0.184 r_mcbond_other 0.171 r_nbd_other 0.17 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.16 r_symmetry_vdw_refined 0.139 r_symmetry_vdw_other 0.134 r_symmetry_hbond_other 0.112 r_chiral_restr 0.083 r_nbtor_other 0.083 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1484 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 66
Software Software Software Name Purpose AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling