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Crystal Structure of the inhibitor Amprenavir (APV) in complex with a multi-drug resistant HIV-1 protease variant (L10I/G48V/I54V/V64I/V82A)Refer: FLAP+ in citation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 Refer citation, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.969 α = 90 b = 91.969 β = 90 c = 106.222 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 133 IMAGE PLATE RIGAKU RAXIS IV 2005-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 23.75 0.054 11.1 27531 27531
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 23.75 27472 27472 1384 99.33 0.199 0.199 0.196 0.2073 0.254 0.2609 RANDOM 39.665
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_4_deg 22.437 r_dihedral_angle_3_deg 15.2 r_dihedral_angle_1_deg 7.27 r_scangle_it 3.324 r_scbond_it 2.288 r_mcangle_it 1.42 r_angle_refined_deg 1.331 r_mcbond_it 1.208 r_angle_other_deg 0.662
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_4_deg 22.437 r_dihedral_angle_3_deg 15.2 r_dihedral_angle_1_deg 7.27 r_scangle_it 3.324 r_scbond_it 2.288 r_mcangle_it 1.42 r_angle_refined_deg 1.331 r_mcbond_it 1.208 r_angle_other_deg 0.662 r_mcbond_other 0.245 r_nbd_other 0.201 r_nbd_refined 0.195 r_nbtor_refined 0.177 r_symmetry_vdw_other 0.173 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.163 r_chiral_restr 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2960 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 138
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction