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Neurospora Crassa Catalase-3 Crystal Structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SY7 PDB ENTRY 1SY7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 291 18% PEG 4000, 50MM TRIS, pH 8.00, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.71 54.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.835 α = 90 b = 154.507 β = 90 c = 162.415 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2002-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.97950 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 34.68 93.5 0.083 0.087 7.2 3.7 152747 20.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 85.8 0.36 0.333 1.7 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SY7 2.3 34.67 136823 92.8 0.237 0.193 0.235 0.242 0.2345 RANDOM 18.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 1.17 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.114 r_dihedral_angle_4_deg 11.89 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 4.611 r_angle_refined_deg 0.763 r_angle_other_deg 0.752 r_nbtor_refined 0.165 r_nbd_other 0.161 r_nbd_refined 0.145 r_scangle_it 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.114 r_dihedral_angle_4_deg 11.89 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 4.611 r_angle_refined_deg 0.763 r_angle_other_deg 0.752 r_nbtor_refined 0.165 r_nbd_other 0.161 r_nbd_refined 0.145 r_scangle_it 0.11 r_symmetry_vdw_refined 0.1 r_symmetry_vdw_other 0.097 r_metal_ion_refined 0.089 r_nbtor_other 0.082 r_scbond_it 0.079 r_xyhbond_nbd_refined 0.075 r_symmetry_hbond_refined 0.057 r_chiral_restr 0.043 r_mcbond_it 0.036 r_mcangle_it 0.034 r_bond_other_d 0.007 r_bond_refined_d 0.005 r_mcbond_other 0.004 r_gen_planes_refined 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21360 Nucleic Acid Atoms Solvent Atoms 1365 Heterogen Atoms 284
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling