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Crystal structure of DesKC-H188V in complex with AMP-PCP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 291 PEG3350, CaCl2, bicine, ADP, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.78 55.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.3 α = 90 b = 34.3 β = 96.6 c = 131.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 toroidal focusing mirror 2007-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9793 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 19.8 96.3 0.057 9.86 3.5 19539 45.298
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 96.8 0.251 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 15 19476 973 100 0.2 0.198 0.2163 0.242 0.2593 RANDOM 49.916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.49 -0.94 0.51 -2.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.632 r_dihedral_angle_4_deg 20.745 r_dihedral_angle_3_deg 19.101 r_dihedral_angle_1_deg 6.327 r_scangle_it 5.323 r_scbond_it 3.092 r_mcangle_it 2.081 r_angle_refined_deg 2.03 r_mcbond_it 1.204 r_angle_other_deg 1.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.632 r_dihedral_angle_4_deg 20.745 r_dihedral_angle_3_deg 19.101 r_dihedral_angle_1_deg 6.327 r_scangle_it 5.323 r_scbond_it 3.092 r_mcangle_it 2.081 r_angle_refined_deg 2.03 r_mcbond_it 1.204 r_angle_other_deg 1.069 r_mcbond_other 0.245 r_chiral_restr 0.102 r_bond_refined_d 0.023 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3268 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 64
Software Software Software Name Purpose SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling