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Crystal structure of DesKC-H188V in complex with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 291 PEG3350, CaCl2, ADP, pH 9, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.97 58.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.743 α = 90 b = 124.05 β = 90 c = 138.303 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Silicon toroidal mirror coated with Rhodium 2007-01-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9793, 0.9795, 0.9756 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.097 41.345 97.8 0.106 0.106 4.961 19.8 35284 35284
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 96.5 0.373 0.373 1.8 14.5 5007
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 30 35159 1756 97.66 0.195 0.193 0.2756 0.232 0.3032 RANDOM 47.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 2.86 -2.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.322 r_dihedral_angle_3_deg 17.185 r_dihedral_angle_4_deg 14.021 r_dihedral_angle_1_deg 6.042 r_scangle_it 4.815 r_scbond_it 2.811 r_mcangle_it 1.78 r_angle_refined_deg 1.743 r_mcbond_it 1.069 r_angle_other_deg 0.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.322 r_dihedral_angle_3_deg 17.185 r_dihedral_angle_4_deg 14.021 r_dihedral_angle_1_deg 6.042 r_scangle_it 4.815 r_scbond_it 2.811 r_mcangle_it 1.78 r_angle_refined_deg 1.743 r_mcbond_it 1.069 r_angle_other_deg 0.973 r_mcbond_other 0.232 r_chiral_restr 0.098 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3021 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 56
Software Software Software Name Purpose SCALA data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling