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Crystal structure of a short chain dehydrogenase from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 22% PEG 3350, 200mM sodium formate, pH 7.0, Vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.37 48.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.501 α = 90 b = 131.26 β = 90 c = 67.952 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97958 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 43.783 100 0.099 0.099 15.3 8 46266 46266 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.472 0.472 4.5 8.2 6669
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 46181 46172 2311 99.98 0.198 0.195 0.1951 0.259 0.2603 RANDOM 35.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.89 0.92 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.484 r_dihedral_angle_4_deg 18.024 r_dihedral_angle_3_deg 15.957 r_dihedral_angle_1_deg 6.075 r_scangle_it 4.206 r_scbond_it 2.581 r_angle_refined_deg 1.543 r_mcangle_it 1.493 r_mcbond_it 0.786 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.484 r_dihedral_angle_4_deg 18.024 r_dihedral_angle_3_deg 15.957 r_dihedral_angle_1_deg 6.075 r_scangle_it 4.206 r_scbond_it 2.581 r_angle_refined_deg 1.543 r_mcangle_it 1.493 r_mcbond_it 0.786 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6253 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SHELXCD phasing SHELXE model building