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Crystal structure of the PvcB (PA2255) protein from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 287 2-5% PEG 20000, 75-150 mM NaCitrate, 100 mM BTP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 3.64 66.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.35 α = 90 b = 125.35 β = 90 c = 107.11 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC QUANTUM 315 2006-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.9 0.083 19.1 9.3 17774 17734 -3 56.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 99.8 0.484 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 30 16728 918 99.72 0.189 0.187 0.225 0.2305 RANDOM 46.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.91 -0.95 -1.91 2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.95 r_dihedral_angle_4_deg 20.455 r_dihedral_angle_3_deg 15 r_dihedral_angle_1_deg 6.426 r_mcangle_it 3.605 r_scangle_it 3.353 r_scbond_it 2.266 r_mcbond_it 2.138 r_angle_refined_deg 1.258 r_symmetry_hbond_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.95 r_dihedral_angle_4_deg 20.455 r_dihedral_angle_3_deg 15 r_dihedral_angle_1_deg 6.426 r_mcangle_it 3.605 r_scangle_it 3.353 r_scbond_it 2.266 r_mcbond_it 2.138 r_angle_refined_deg 1.258 r_symmetry_hbond_refined 0.305 r_nbtor_refined 0.304 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2229 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 1
Software Software Software Name Purpose Blu-Ice data collection SnB phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling