☰ Navigation Tabs
Arabidopsis thaliana acetohydroxyacid synthase in complex with monosulfuron
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YBH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.4 291 0.1M CHES, 0.2M Li2S04, 1M potassium sodium tartrate, pH 9.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 6.73 81.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.866 α = 90 b = 178.866 β = 90 c = 186.078 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate mirrors 2005-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1.000 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 89.44 80.5 0.072 0.072 22.5 6.4 35771 28796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.07 0.228 0.228 4.5 5.4 2026
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1YBH 3 89.44 33904 27246 1448 80.36 0.19383 0.19383 0.19226 0.22348 0.2128 RANDOM 50.894
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.74 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_4_deg 15.177 r_dihedral_angle_1_deg 4.969 r_angle_refined_deg 1.106 r_scangle_it 0.954 r_mcangle_it 0.551 r_scbond_it 0.537 r_mcbond_it 0.303 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.74 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_4_deg 15.177 r_dihedral_angle_1_deg 4.969 r_angle_refined_deg 1.106 r_scangle_it 0.954 r_mcangle_it 0.551 r_scbond_it 0.537 r_mcbond_it 0.303 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.236 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4431 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 119
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling CCP4 phasing