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Crystal Structure of Human Prp8, Residues 1755-2016
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.28 62.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.426 α = 90 b = 83.426 β = 90 c = 96.263 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99 28624 28624 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 30 2 3623 28264 181 98.7 0.22 0.20503 0.205 0.2024 0.24804 0.245 RANDOM 38.754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 0.46 0.92 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.956 r_dihedral_angle_4_deg 14.546 r_dihedral_angle_3_deg 14.431 r_dihedral_angle_1_deg 5.617 r_scangle_it 2.414 r_scbond_it 1.449 r_angle_refined_deg 1.118 r_mcangle_it 0.91 r_mcbond_it 0.492 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.956 r_dihedral_angle_4_deg 14.546 r_dihedral_angle_3_deg 14.431 r_dihedral_angle_1_deg 5.617 r_scangle_it 2.414 r_scbond_it 1.449 r_angle_refined_deg 1.118 r_mcangle_it 0.91 r_mcbond_it 0.492 r_nbtor_refined 0.308 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.162 r_symmetry_vdw_refined 0.156 r_metal_ion_refined 0.137 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2083 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXS phasing