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Crystal structures of the kinase domain of AKT2 in complex with ATP-competitive inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 14% PEG 2KMME, 100 mM Tris pH 8.0 and 10% ethanol diffused in. Seeded., vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.21 44.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.823 α = 90 b = 116.823 β = 90 c = 45.102 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 un-focused beam 2005-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 41.2 100 0.233 5.7 18873 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.82 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 41.2 17891 971 99.99 0.21366 0.21082 0.2136 0.26775 0.2699 RANDOM 22.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 14.084 r_dihedral_angle_3_deg 13.503 r_dihedral_angle_1_deg 5.185 r_angle_refined_deg 1.16 r_angle_other_deg 0.768 r_scangle_it 0.647 r_scbond_it 0.378 r_mcangle_it 0.376 r_symmetry_vdw_other 0.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 14.084 r_dihedral_angle_3_deg 13.503 r_dihedral_angle_1_deg 5.185 r_angle_refined_deg 1.16 r_angle_other_deg 0.768 r_scangle_it 0.647 r_scbond_it 0.378 r_mcangle_it 0.376 r_symmetry_vdw_other 0.214 r_mcbond_it 0.212 r_nbd_refined 0.183 r_nbtor_refined 0.175 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.125 r_symmetry_vdw_refined 0.115 r_symmetry_hbond_refined 0.109 r_nbtor_other 0.079 r_chiral_restr 0.054 r_mcbond_other 0.03 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5341 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 68
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction JDirector data collection HKL-2000 data reduction PHASER phasing