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Crystal Structure of Human Haspin with a pyrazolo-pyrimidine ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VUW PDB entry 2VUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.1M PCB, 30% PEG 1K , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.87 57.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.497 α = 90 b = 86.952 β = 90 c = 68.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2008-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25.44 99.8 0.079 0.079 10.2 3.1 32235
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.503 0.503 2.1 3 4630
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2VUW 2 25.44 30770 1428 99.63 0.17017 0.17017 0.16771 0.1715 0.22462 0.2268 RANDOM 19.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -1.07 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.023 r_dihedral_angle_4_deg 14.748 r_dihedral_angle_3_deg 12.54 r_scangle_it 9.286 r_scbond_it 6.984 r_dihedral_angle_1_deg 6.91 r_mcangle_it 4.441 r_mcbond_it 3.317 r_angle_other_deg 1.632 r_angle_refined_deg 1.453
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.023 r_dihedral_angle_4_deg 14.748 r_dihedral_angle_3_deg 12.54 r_scangle_it 9.286 r_scbond_it 6.984 r_dihedral_angle_1_deg 6.91 r_mcangle_it 4.441 r_mcbond_it 3.317 r_angle_other_deg 1.632 r_angle_refined_deg 1.453 r_mcbond_other 1.12 r_chiral_restr 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2602 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection MOSFLM data reduction SCALA data scaling PHASER phasing