X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729810-13% PEG MME 5000, 100 mM HEPES pH 7.0, 4-14% Tacsimate, 10% dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.9368.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 263.033α = 90
b = 263.033β = 90
c = 90.816γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMAR scanner 345 mm plate2007-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.285099.90.1340.10520.15.41624141624141113.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.282.3699.90.5070.5392.13.115661

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2850162414154214813999.710.197460.195770.22983RANDOM36.385
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.27-0.14-0.270.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.821
r_dihedral_angle_4_deg21.843
r_dihedral_angle_3_deg17.664
r_dihedral_angle_1_deg5.859
r_scangle_it3.163
r_scbond_it1.957
r_angle_refined_deg1.336
r_mcangle_it1.153
r_mcbond_it0.695
r_symmetry_hbond_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.821
r_dihedral_angle_4_deg21.843
r_dihedral_angle_3_deg17.664
r_dihedral_angle_1_deg5.859
r_scangle_it3.163
r_scbond_it1.957
r_angle_refined_deg1.336
r_mcangle_it1.153
r_mcbond_it0.695
r_symmetry_hbond_refined0.311
r_nbtor_refined0.305
r_symmetry_vdw_refined0.254
r_nbd_refined0.207
r_xyhbond_nbd_refined0.151
r_chiral_restr0.095
r_bond_refined_d0.011
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15685
Nucleic Acid Atoms
Solvent Atoms724
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
PHASESphasing