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Crystal structure of a predicted zincin-like metalloprotease (acel_2062) from acidothermus cellulolyticus 11b at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.17 277 24.0% polyethylene glycol 8000, 0.167M calcium acetate, 0.1M MES pH 6.17, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.07 40.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.03 α = 90 b = 58.82 β = 93.51 c = 46.93 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97949,0.91837,0.97879 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.437 95.3 0.063 19523 -3 17.514
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 94.6 0.48 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.437 19518 1004 98.99 0.176 0.175 0.1792 0.204 0.1997 RANDOM 11.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.07 -0.15 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.589 r_dihedral_angle_4_deg 20.942 r_dihedral_angle_3_deg 12.021 r_dihedral_angle_1_deg 5.849 r_scangle_it 2.902 r_scbond_it 1.933 r_angle_refined_deg 1.386 r_mcangle_it 1.216 r_angle_other_deg 0.818 r_mcbond_it 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.589 r_dihedral_angle_4_deg 20.942 r_dihedral_angle_3_deg 12.021 r_dihedral_angle_1_deg 5.849 r_scangle_it 2.902 r_scbond_it 1.933 r_angle_refined_deg 1.386 r_mcangle_it 1.216 r_angle_other_deg 0.818 r_mcbond_it 0.802 r_symmetry_vdw_other 0.251 r_nbd_refined 0.231 r_mcbond_other 0.204 r_symmetry_vdw_refined 0.2 r_metal_ion_refined 0.198 r_symmetry_hbond_refined 0.189 r_nbd_other 0.188 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.179 r_nbtor_other 0.08 r_chiral_restr 0.076 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1791 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing