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human phosphdiesterase 9 substrate complex (ES complex)
Crystallization Crystal Properties Matthews coefficient Solvent content 4.67 73.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.787 α = 90 b = 103.787 β = 90 c = 269.799 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ DW 1.5418 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 96.67 37247 37247 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.771 2 7.3 4075
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.7 96.67 37247 4216 99.72 0.19089 0.18757 0.1923 0.21902 0.2175 RANDOM 42.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.06 2.06 -4.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.576 r_dihedral_angle_4_deg 21.117 r_dihedral_angle_3_deg 17.289 r_dihedral_angle_1_deg 6.055 r_scangle_it 3.421 r_scbond_it 2.318 r_angle_refined_deg 1.931 r_mcangle_it 1.262 r_angle_other_deg 1.118 r_mcbond_it 1.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.576 r_dihedral_angle_4_deg 21.117 r_dihedral_angle_3_deg 17.289 r_dihedral_angle_1_deg 6.055 r_scangle_it 3.421 r_scbond_it 2.318 r_angle_refined_deg 1.931 r_mcangle_it 1.262 r_angle_other_deg 1.118 r_mcbond_it 1.086 r_symmetry_vdw_other 0.292 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.25 r_nbtor_refined 0.202 r_nbd_other 0.2 r_mcbond_other 0.186 r_xyhbond_nbd_refined 0.169 r_metal_ion_refined 0.169 r_symmetry_hbond_refined 0.15 r_chiral_restr 0.106 r_nbtor_other 0.096 r_bond_refined_d 0.023 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5412 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement